Journal: Nature immunology
Article Title: PD-1 blockade in subprimed CD8 cells induces dysfunctional PD-1 + CD38 hi cells and anti-PD-1 resistance
doi: 10.1038/s41590-019-0441-y
Figure Lengend Snippet: a, Schedule of mouse treatments. Tumor tissues were collected 3 d after priming (day 13) or 3 d after boosting (day 20). b,c, Numbers of total (b) and antigen-specific CD8+ T (c) cells at day 13. d,e, Frequencies of annexin V+ total (d) and antigen-specific CD8+ T (e) cells in the TME at days 20 and 13, as shown. f,g, Frequencies of CD40L+ (f) and IFN-γ+ (g) CD8+ T cells in the TME at days 20 and 13 as shown. Flow cytometry data are the average from two independent experiments. Each dot corresponds to one mouse with the indicated number of mice per group given in parentheses. The error bars indicate the s.e.m. For statistical comparison, an unpaired, one-tailed Student’s t-test was used. NS (b); *P = 0.0344 (lower), *P = 0.0448 (upper), ***P = 0.0005, ****P ≤ 0.0001 (c); *P = 0.0229 (lower), *P = 0.0179 (upper), **P = 0.0033 (left), **P = 0.0068 (right), ***P = 0.001 (left panel); ***P = 0.0004 (lower), ***P = 0.0002 (upper), ****P ≤ 0.0001 (right panel) (d); *P = 0.0498, **P = 0.009 (lower), **P = 0.0038 (upper) (left panel); *P = 0.0254 (lower), *P = 0.0479 (middle), *P = 0.0496 (top), **P = 0.0067, ***P = 0.0004 (right panel) (e); *P = 0.0138 (left), *P = 0.0274 (right) (left panel); *P = 0.0187 (lower), *P = 0.0339 (upper), **P = 0.0063 (lower), **P = 0.002 (upper), ****P ≤ 0.0001 (right panel) (f); *P = 0.0264 (left), *P = 0.05 (middle), *P = 0.0177(right), *P = 0.05 (top), ***P = 0.0002 (left panel); *P = 0.015 (right panel) (g). h, Experimental outline for Pmel-1 CD8+ T cell treatment. T1, T2 and T3 refer to various time points during the course of treatment when samples were picked for analysis. i–m. Flow cytometry analysis of phosphorylated SHP2+ (i), Lck+ (j), Zap70+ (k), LAT+ (l) and Akt+ (m) CD8+ T cells at three time points. Data are representative of two independent experiments with at least 3–4 technical replicates per group. The error bars indicate the s.e.m. For comparisons, an unpaired, one-tailed Student’s t-test was used. T1: NS; T2: *P = 0.0466; T3: *P = 0.05 (i); T1: **P = 0.0042; T2: **P = 0.0043; T3: *P = 0.0457 (j); T1: NS; T2: **P = 0.0086; T3: *P = 0.0363 (k); T1: NS; T2: **P = 0.0054; T3: **P = 0.0017 (l); T1: *P = 0.048; T2: ***P = 0.0002; T3: **P = 0.0034 (m). *P ≤ 0.05; **P ≤ 0.01; ***P ≤ 0.001; ****P ≤ 0.0001.
Article Snippet: The fluorochrome-labeled anti-mouse antibodies used for flow cytometry measurements were V450-CD45 (1:200, clone 30-F11, catalog no. 103125; eBioscience); TxRd-CD3 (1:200, clone 145–2c11, catalog no. 562286; BD Biosciences); Alexa Fluor 700-CD8a (1:200, clone 53–6.7, catalog no. 557959; BD Biosciences); PE-Annexin V (1:200, catalog no. 556421; BD Biosciences); PE-CD40L (1:20, clone MR1, catalog no. 553658; BD Biosciences), FITC-IFN-γ (1:100, clone xmg1.2 catalog no. 557724; BD Biosciences), Alexa Fluor 700-CD62L (1:200, clone MEL-14, catalog no. 560517; BD Biosciences); FITC-CD44 (1:200, clone IM7, catalog no. 553133; BD Biosciences); Alexa Fluor 700-CD38 (1:200, clone 90, catalog no. 56–0381-82; Invitrogen); PE-PD-1 (1:200, clone 29 F.1A12, catalog no. 135206; BioLegend); APC-Ki-67 (1:200, clone SolA15, catalog no. 17–5698-82; Invitrogen); Alexa Fluor 647-p-SHP2 (pY542) (1:10, clone L99–921, catalog no. 560390; BD Biosciences); PE-phospho-Akt (pS473) (1:10, clone M89–61, catalog no. 560378; BD Biosciences); PerCP-eFluor710-p-Lck (Tyr505) (1:10, clone SRRCHA, catalog no. 46–9076-42; Invitrogen); PE-p-Zap70 (Y319, Y352) (1:10, clone 17 A/P-ZAP70 (RUO), catalog no. 557881; BD Biosciences); and AF647-p-LAT (Tyr200) (1:10, polyclonal, catalog no. bs-10128R-A647; Bioss Antibodies).
Techniques: Flow Cytometry, One-tailed Test